Variant report

Variant	rs10845176
Chromosome Location	chr12:7592445-7592446
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:7591433..7594130-chr12:7595262..7598140,3	K562	blood:

Variant related genes	Relation type
ENSG00000177675	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10444429	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10459096	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10772247	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10772330	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10772331	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10772338	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10845124	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10845159	0.89[ASN][1000 genomes]
rs10845177	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10845178	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11053688	0.83[ASN][1000 genomes]
rs11053769	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11053788	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12321231	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4072798	0.81[ASN][1000 genomes]
rs58195891	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7133310	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350216	chr12:7432676-7604018	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7590000-7593400	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr12:7590200-7593200	Active TSS	K562	blood
3	chr12:7591000-7593600	Active TSS	A549	lung
4	chr12:7591200-7593200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr12:7591200-7593400	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr12:7591600-7592800	Active TSS	Placenta	Placenta
7	chr12:7591800-7593000	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr12:7592000-7593400	Active TSS	H1 Cell Line	embryonic stem cell
9	chr12:7592200-7592600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:7592200-7592600	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
11	chr12:7592200-7592600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
12	chr12:7592200-7592800	Active TSS	NHEK	skin
13	chr12:7592200-7593000	Active TSS	H9 Cell Line	embryonic stem cell
14	chr12:7592200-7593000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr12:7592200-7593000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:7592200-7593000	Active TSS	Duodenum Mucosa	Duodenum
17	chr12:7592200-7593000	Active TSS	NH-A	brain
18	chr12:7592200-7593200	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr12:7592200-7593200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:7592200-7593200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:7592200-7593200	Bivalent/Poised TSS	Primary neutrophils fromperipheralblood	blood
22	chr12:7592200-7593200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:7592200-7593200	Active TSS	Fetal Brain Female	brain
24	chr12:7592200-7593200	Active TSS	Osteobl	bone
25	chr12:7592200-7593400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr12:7592200-7593400	Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr12:7592200-7593400	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr12:7592200-7593400	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr12:7592200-7593400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr12:7592200-7593400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:7592200-7593400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr12:7592200-7593400	Active TSS	HUVEC	blood vessel
33	chr12:7592200-7593600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr12:7592200-7594000	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr12:7592400-7592600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr12:7592400-7592600	Enhancers	Primary hematopoietic stem cells	blood
37	chr12:7592400-7592600	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
38	chr12:7592400-7592600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr12:7592400-7592600	Flanking Bivalent TSS/Enh	Liver	Liver
40	chr12:7592400-7592600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
41	chr12:7592400-7592600	Active TSS	Fetal Lung	lung
42	chr12:7592400-7592600	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
43	chr12:7592400-7592800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
44	chr12:7592400-7592800	Active TSS	Primary T helper cells PMA-I stimulated	--
45	chr12:7592400-7592800	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr12:7592400-7592800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr12:7592400-7592800	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr12:7592400-7592800	Active TSS	Brain Anterior Caudate	brain
49	chr12:7592400-7592800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
50	chr12:7592400-7592800	Bivalent/Poised TSS	Fetal Intestine Large	intestine

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