Variant report

Variant	rs11053788
Chromosome Location	chr12:7573146-7573147
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10444429	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10459096	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10772247	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10772330	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10772331	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10772338	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10845124	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10845159	0.86[ASN][1000 genomes]
rs10845176	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10845177	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10845178	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11053688	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11053769	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11513314	0.83[ASN][1000 genomes]
rs12321231	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4072798	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58195891	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7133310	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350216	chr12:7432676-7604018	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3442235	chr12:7572860-7575408	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7527600-7591200	Weak transcription	Placenta	Placenta
2	chr12:7568400-7583200	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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