Variant report

Variant	rs10845159
Chromosome Location	chr12:7585971-7585972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10444429	0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs10459096	0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs10772247	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs10772330	0.88[ASN][1000 genomes]
rs10772331	0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[ASN][1000 genomes]
rs10845124	0.86[ASN][1000 genomes]
rs10845176	0.89[ASN][1000 genomes]
rs10845177	0.89[ASN][1000 genomes]
rs11053688	0.95[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs11053769	1.00[CHB][hapmap];0.90[CHD][hapmap];0.86[ASN][1000 genomes]
rs11053788	0.86[ASN][1000 genomes]
rs11054072	0.82[ASW][hapmap]
rs12321231	0.91[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs4072798	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs58195891	0.94[ASN][1000 genomes]
rs7133310	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350216	chr12:7432676-7604018	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10845159	PLEKHG6	cis	cerebellum	SCAN
rs10845159	PHB2	cis	parietal	SCAN
rs10845159	NDUFA9	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7527600-7591200	Weak transcription	Placenta	Placenta
2	chr12:7582600-7592200	Weak transcription	Adipose Nuclei	Adipose
3	chr12:7583800-7587200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:7584200-7587000	Enhancers	NHDF-Ad	bronchial
5	chr12:7585000-7586000	Enhancers	Osteobl	bone
6	chr12:7585000-7586400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:7585000-7586600	Enhancers	HMEC	breast
8	chr12:7585000-7586600	Enhancers	NHEK	skin
9	chr12:7585200-7586400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:7585200-7586400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr12:7585600-7586200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr12:7585600-7586400	Flanking Active TSS	HUVEC	blood vessel
13	chr12:7585800-7586000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:7585800-7586400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:7585800-7586400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr12:7585800-7586400	Flanking Active TSS	A549	lung
17	chr12:7585800-7586400	Flanking Active TSS	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links