Variant report

Variant	rs10774560
Chromosome Location	chr12:121030332-121030333
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1048830	0.81[ASN][1000 genomes]
rs1050187	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10744752	0.86[ASN][1000 genomes]
rs10774549	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10774551	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10774553	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10774555	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10774561	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10849753	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10849754	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10849757	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10849758	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10849759	0.83[CEU][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10849766	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10849767	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11065132	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11065145	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11065149	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11065150	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11065151	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11065154	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12309824	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12312613	0.94[EUR][1000 genomes]
rs12370495	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12371550	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12813930	0.85[ASN][1000 genomes]
rs12814055	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1563333	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2138251	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2168319	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2233676	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2235217	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2235218	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2393590	0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3213565	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3742052	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3759394	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3759396	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3893104	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3916065	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4766966	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4766968	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4766969	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4767897	0.81[ASN][1000 genomes]
rs4767902	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4767903	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4767904	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4767905	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4767906	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4767910	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4767911	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4767912	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4767914	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4767916	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs509445	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs516479	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs523522	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs524735	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs546417	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55848094	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56029862	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs579919	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs585510	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs603574	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs643372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs651627	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs655530	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs670568	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs687873	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7136951	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71454645	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7471	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7488320	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9040	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9788155	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9795621	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs10774560	COQ5	cis	lung	GTEx
rs10774560	COQ5	cis	Adipose Subcutaneous	GTEx
rs10774560	COQ5	cis	Frontal Cortex	GTEx
rs10774560	COQ5	cis	Muscle Skeletal	GTEx
rs10774560	COQ5	Cis_1M	lymphoblastoid	RTeQTL
rs10774560	COQ5	cis	Heart Left Ventricle	GTEx
rs10774560	COQ5	cis	Artery Tibial	GTEx
rs10774560	COQ5	cis	Temporal Cortex	GTEx
rs10774560	COQ5	cis	Esophagus Muscularis	GTEx
rs10774560	COQ5	cis	Nerve Tibial	GTEx
rs10774560	COQ5	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121028000-121033200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr12:121029600-121030400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr12:121029800-121030400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr12:121029800-121031200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:121030200-121031000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:121030200-121035200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:121030200-121037200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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