Variant report

Variant	rs10774561
Chromosome Location	chr12:121038280-121038281
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121035601..121037513-chr12:121037577..121039226,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1050187	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs10774555	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs10774560	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10849753	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs10849754	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs10849757	0.83[CEU][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes]
rs10849758	0.86[EUR][1000 genomes]
rs10849759	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs10849766	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10849767	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11065145	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs11065149	0.83[EUR][1000 genomes]
rs11065151	0.82[EUR][1000 genomes]
rs11065154	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs12309824	0.85[EUR][1000 genomes]
rs12312613	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12370495	0.85[EUR][1000 genomes]
rs12371550	0.85[EUR][1000 genomes]
rs12814055	0.84[EUR][1000 genomes]
rs1563333	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2235217	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2235218	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2393590	0.94[JPT][hapmap]
rs3213565	0.83[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs3742052	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs3916065	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4766966	0.91[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs4766968	0.84[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes]
rs4766969	0.85[EUR][1000 genomes]
rs4767902	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4767906	0.82[EUR][1000 genomes]
rs4767910	0.84[EUR][1000 genomes]
rs4767911	0.83[EUR][1000 genomes]
rs4767912	0.85[EUR][1000 genomes]
rs4767914	0.85[EUR][1000 genomes]
rs4767916	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs509445	0.82[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs516479	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs523522	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs524735	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs546417	0.87[EUR][1000 genomes]
rs55848094	0.85[EUR][1000 genomes]
rs56029862	0.83[EUR][1000 genomes]
rs579919	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs585510	0.86[EUR][1000 genomes]
rs603574	0.84[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs643372	0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs651627	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs655530	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs670568	0.82[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs687873	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7136951	0.81[EUR][1000 genomes]
rs71454645	0.81[EUR][1000 genomes]
rs7471	0.83[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs7488320	0.85[EUR][1000 genomes]
rs9040	0.82[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs9788155	0.83[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs9795621	0.83[EUR][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs10774561	COQ5	cis	Heart Left Ventricle	GTEx
rs10774561	COQ5	cis	Artery Tibial	GTEx
rs10774561	COQ5	cis	Frontal Cortex	GTEx
rs10774561	COQ5	cis	Esophagus Muscularis	GTEx
rs10774561	COQ5	cis	Artery Aorta	GTEx
rs10774561	COQ5	cis	Nerve Tibial	GTEx
rs10774561	COQ5	Cis_1M	lymphoblastoid	RTeQTL
rs10774561	COQ5	cis	Muscle Skeletal	GTEx
rs10774561	COQ5	cis	Adipose Subcutaneous	GTEx
rs10774561	COQ5	cis	Skin Sun Exposed Lower leg	GTEx
rs10774561	COQ5	cis	lung	GTEx

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121035800-121038400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:121036400-121041000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:121036600-121039000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:121036600-121039000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:121036600-121039400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:121036800-121038400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:121036800-121038800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr12:121036800-121039200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:121037200-121038800	Weak transcription	Placenta	Placenta
10	chr12:121037400-121038400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:121037400-121038600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr12:121037400-121038600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr12:121037400-121039800	Weak transcription	Hela-S3	cervix
14	chr12:121037400-121039800	Weak transcription	K562	blood
15	chr12:121037400-121040400	Weak transcription	A549	lung
16	chr12:121037600-121039000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr12:121037800-121038800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr12:121037800-121038800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr12:121037800-121039200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr12:121038000-121038400	Enhancers	Brain Hippocampus Middle	brain
21	chr12:121038000-121038400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr12:121038000-121038600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr12:121038000-121038600	Enhancers	Fetal Brain Female	brain
24	chr12:121038000-121039200	Enhancers	Brain Cingulate Gyrus	brain
25	chr12:121038000-121039200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr12:121038000-121039200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr12:121038000-121039800	Weak transcription	Stomach Mucosa	stomach
28	chr12:121038000-121056800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr12:121038200-121039200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
30	chr12:121038200-121039400	Enhancers	Fetal Brain Male	brain

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