Variant report

Variant	rs3742052
Chromosome Location	chr12:120966921-120966922
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:455)
CpG islands
(count:61)
Chromatin interactive
region (count:20)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:455 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ETS1	chr12:120966782-120967059	K562	blood:	n/a	n/a
2	REST	chr12:120966510-120968109	A549	lung:	n/a	n/a
3	POLR2A	chr12:120966548-120967342	MCF-7	breast:	n/a	n/a
4	MYC	chr12:120966907-120967048	K562	blood:	n/a	n/a
5	IRF1	chr12:120966627-120967990	K562	blood:	n/a	chr12:120967969-120967979 chr12:120967969-120967983 chr12:120967965-120967979 chr12:120967887-120967896 chr12:120967957-120967977
6	YY1	chr12:120966554-120967374	SK-N-SH	brain:	n/a	chr12:120966936-120966948
7	TBL1XR1	chr12:120966704-120967392	GM12878	blood:	n/a	n/a
8	CEBPB	chr12:120966633-120967426	A549	lung:	n/a	chr12:120966981-120966994
9	POLR2A	chr12:120966453-120967749	PFSK-1	brain:	n/a	n/a
10	YY1	chr12:120966510-120967392	A549	lung:	n/a	chr12:120966936-120966948
11	REST	chr12:120966878-120967101	PFSK-1	brain:	n/a	n/a
12	POLR2A	chr12:120966702-120967221	K562	blood:	n/a	n/a
13	ATF3	chr12:120966588-120967242	A549	lung:	n/a	n/a
14	POLR2A	chr12:120966702-120967238	MCF10A-Er-Src	breast:	n/a	n/a
15	POLR2A	chr12:120966555-120967334	GM12878	blood:	n/a	n/a
16	POLR2A	chr12:120966545-120967284	ECC-1	luminal epithelium:	n/a	n/a
17	ATF2	chr12:120966571-120967241	GM12878	blood:	n/a	n/a
18	POLR2A	chr12:120966617-120967356	H1-neurons	neurons:	n/a	n/a
19	POLR2A	chr12:120966606-120967309	PANC-1	pancreas:	n/a	n/a
20	JUND	chr12:120966877-120967103	HepG2	liver:	n/a	n/a
21	TCF12	chr12:120966595-120967340	ECC-1	luminal epithelium:	n/a	n/a
22	CEBPB	chr12:120966704-120967253	MCF-7	breast:	n/a	chr12:120966981-120966994
23	TAF1	chr12:120966541-120967309	PFSK-1	brain:	n/a	n/a
24	TEAD4	chr12:120966494-120967896	K562	blood:	n/a	n/a
25	MAX	chr12:120966698-120967939	NB4	blood:	n/a	n/a
26	CTCF	chr12:120966913-120966988	GM12878	blood:	n/a	n/a
27	FOXA2	chr12:120966803-120967186	A549	lung:	n/a	n/a
28	MXI1	chr12:120966605-120967897	IMR90	lung:	n/a	n/a
29	NR2F2	chr12:120966538-120967284	K562	blood:	n/a	n/a
30	JUND	chr12:120966796-120967170	HepG2	liver:	n/a	chr12:120967128-120967140
31	POLR2A	chr12:120966561-120967403	HUVEC	blood vessel:	n/a	n/a
32	TAF7	chr12:120966609-120967151	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr12:120966595-120967226	GM12891	blood:	n/a	n/a
34	SIN3AK20	chr12:120966491-120967185	SK-N-SH	brain:	n/a	n/a
35	REST	chr12:120966666-120967093	PANC-1	pancreas:	n/a	n/a
36	GATA3	chr12:120966614-120967796	A549	lung:	n/a	chr12:120967046-120967053
37	SIX5	chr12:120966767-120967193	H1-hESC	embryonic stem cell:	n/a	n/a
38	TBL1XR1	chr12:120966634-120967806	K562	blood:	n/a	n/a
39	SIN3AK20	chr12:120966833-120967173	HepG2	liver:	n/a	n/a
40	MAX	chr12:120966782-120967167	K562	blood:	n/a	n/a
41	EP300	chr12:120966634-120967280	HepG2	liver:	n/a	n/a
42	MAX	chr12:120966636-120967259	MCF-7	breast:	n/a	n/a
43	TAF1	chr12:120966621-120967181	Hela-S3	cervix:	n/a	n/a
44	SIX5	chr12:120966772-120967198	GM12878	blood:	n/a	n/a
45	SIN3AK20	chr12:120966737-120967181	H1-hESC	embryonic stem cell:	n/a	n/a
46	TAF1	chr12:120966703-120967187	SK-N-SH	brain:	n/a	n/a
47	POLR2A	chr12:120966730-120967183	Hela-S3	cervix:	n/a	n/a
48	ZKSCAN1	chr12:120966713-120967167	Hela-S3	cervix:	n/a	n/a
49	MAX	chr12:120966487-120967945	A549	lung:	n/a	n/a
50	IRF1	chr12:120966791-120967240	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:120966889-120966939	HAEpiC	amniotic membrane:	n/a
2	chr12:120966889-120966939	HCM	heart:	n/a
3	chr12:120966889-120966939	K562	blood:	n/a
4	chr12:120966889-120966939	SK-N-MC	brain:	n/a
5	chr12:120966889-120966939	HL-60	blood:	n/a
6	chr12:120966889-120966939	HepG2	liver:	n/a
7	chr12:120966889-120966939	ovcar-3	ovarian:	n/a
8	chr12:120966889-120966939	ProgFib	skin:	n/a
9	chr12:120966889-120966939	HRPEpiC	eye:	n/a
10	chr12:120966889-120966939	NH-A	brain:	n/a
11	chr12:120966889-120966939	SK-N-SH_RA	brain:	n/a
12	chr12:120966889-120966939	GM12891	blood:	n/a
13	chr12:120966889-120966939	HRCEpiC	kidney:	n/a
14	chr12:120966889-120966939	AG09309	skin:	n/a
15	chr12:120966889-120966939	ECC-1	luminal epithelium:	n/a
16	chr12:120966889-120966939	MCF10A-Er-Src	breast:	n/a
17	chr12:120966889-120966939	HCT-116	colon:	n/a
18	chr12:120966889-120966939	GM06990	blood:	n/a
19	chr12:120966889-120966939	HEK293	kidney:	embryo
20	chr12:120966889-120966939	NHDF-neo	bronchial:	n/a
21	chr12:120966889-120966939	GM19239	blood:	n/a
22	chr12:120966889-120966939	Hela-S3	cervix:	n/a
23	chr12:120966889-120966939	HUVEC	blood vessel:	n/a
24	chr12:120966889-120966939	U87	brain:	n/a
25	chr12:120966889-120966939	SAEC	small airway:	n/a
26	chr12:120966889-120966939	AG09319	gingival:	n/a
27	chr12:120966889-120966939	HMEC	breast:	n/a
28	chr12:120966889-120966939	CMK	blood:	n/a
29	chr12:120966889-120966939	NHBE	bronchial:	n/a
30	chr12:120966889-120966939	AG04449	skin:	fetal
31	chr12:120966889-120966939	NB4	blood:	n/a
32	chr12:120966889-120966939	GM12892	blood:	n/a
33	chr12:120966889-120966939	AG10803	skin:	n/a
34	chr12:120966889-120966939	HCPEpiC	choroid plexus:	n/a
35	chr12:120966889-120966939	SK-N-SH	brain:	n/a
36	chr12:120966889-120966939	A549	lung:	n/a
37	chr12:120966889-120966939	NT2-D1	testis:	n/a
38	chr12:120966889-120966939	Caco-2	colon:	n/a
39	chr12:120966889-120966939	PrEC	prostate:	n/a
40	chr12:120966889-120966939	PANC-1	pancreas:	n/a
41	chr12:120966889-120966939	T-47D	breast:	n/a
42	chr12:120966889-120966939	HRE	kidney:	n/a
43	chr12:120966889-120966939	Jurkat	blood:	n/a
44	chr12:120966889-120966939	SKMC	muscle:	n/a
45	chr12:120966889-120966939	HEEpiC	esophagus:	n/a
46	chr12:120966889-120966939	Hepatocyte	liver:	n/a
47	chr12:120966889-120966939	IMR90	lung:	fetal
48	chr12:120966889-120966939	BE2_C	brain:	n/a
49	chr12:120966889-120966939	PFSK-1	brain:	n/a
50	chr12:120966889-120966939	HCF	heart:	n/a

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:120905972..120909439-chr12:120965576..120970322,8	MCF-7	breast:
2	chr12:120728049..120731590-chr12:120965249..120968541,5	K562	blood:
3	chr12:120932502..120935417-chr12:120966408..120968984,3	MCF-7	breast:
4	chr12:120637319..120639058-chr12:120965439..120967173,2	K562	blood:
5	chr12:120966448..120968669-chr12:120990053..120993175,3	MCF-7	breast:
6	chr12:120728453..120733011-chr12:120965347..120973411,16	MCF-7	breast:
7	chr12:120964646..120969249-chr12:120969286..120973951,11	MCF-7	breast:
8	chr12:120965360..120967085-chr12:121018477..121020344,2	MCF-7	breast:
9	chr12:120636466..120640337-chr12:120966729..120969535,3	MCF-7	breast:
10	chr12:120941530..120943140-chr12:120965565..120967204,2	K562	blood:
11	chr12:120932523..120935512-chr12:120965345..120968367,3	MCF-7	breast:
12	chr12:120966687..120967455-chr9:127703093..127703620,2	Hela-S3	cervix:
13	chr12:120637319..120640372-chr12:120965439..120969225,4	K562	blood:
14	chr12:120965472..120968197-chr12:121646463..121648820,2	K562	blood:
15	chr12:120729237..120731146-chr12:120965181..120968217,3	MCF-7	breast:
16	chr12:120905660..120907924-chr12:120965439..120968401,2	MCF-7	breast:
17	chr12:120932975..120935609-chr12:120965561..120969430,6	K562	blood:
18	chr12:120957931..120961422-chr12:120962483..120967009,5	K562	blood:
19	chr12:120934054..120936287-chr12:120966292..120969256,3	K562	blood:
20	chr12:120907343..120910344-chr12:120965426..120968868,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POP5-2	chr12:120966743-120966957	NONHSAT031180

No data

Variant related genes	Relation type
RNF10	TF binding region
RNF10	CpG island
ENSG00000136935	Chromatin interaction
ENSG00000022840	Chromatin interaction
ENSG00000167272	Chromatin interaction
ENSG00000248008	Chromatin interaction
ENSG00000111786	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000088986	Chromatin interaction
ENSG00000135124	Chromatin interaction
ENSG00000222601	Chromatin interaction
ENSG00000255857	Chromatin interaction
ENSG00000089157	Chromatin interaction
ENSG00000200795	Chromatin interaction
ENSG00000241030	Chromatin interaction
ENSG00000110871	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1048830	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1050187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10744752	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10774549	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10774551	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10774553	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10774555	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10774560	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10774561	0.85[EUR][1000 genomes]
rs10849753	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10849754	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849757	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849758	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849759	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849766	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10849767	0.84[EUR][1000 genomes]
rs11065132	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11065145	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065150	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11065151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11065154	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12309824	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12312613	0.84[EUR][1000 genomes]
rs12370495	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12371550	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12813930	0.93[ASN][1000 genomes]
rs12814055	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1563333	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2138251	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2168319	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2233676	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235217	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2235218	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2292681	0.91[YRI][hapmap]
rs2393590	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3213565	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3759394	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759396	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3893104	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3916065	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4766966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4766968	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4766969	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4767897	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4767902	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4767903	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4767904	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767905	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4767906	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4767910	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4767911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767912	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767914	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4767916	0.86[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs509445	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs516479	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs523522	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs524735	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs546417	0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55848094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56029862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs579919	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs585510	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs603574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs608724	0.90[YRI][hapmap]
rs61945857	0.91[AMR][1000 genomes]
rs643372	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs651627	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs655530	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs670568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs687873	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7136951	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71454645	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7308053	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7471	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7488320	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs787947	0.91[YRI][hapmap]
rs9040	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9788155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9795621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs3742052	COQ5	cis	parietal	SCAN
rs3742052	COQ5	cis	Nerve Tibial	GTEx
rs3742052	COQ5	cis	Skin Sun Exposed Lower leg	GTEx
rs3742052	COQ5	cis	Artery Aorta	GTEx
rs3742052	COQ5	cis	Heart Left Ventricle	GTEx
rs3742052	COQ5	cis	Artery Tibial	GTEx
rs3742052	COQ5	cis	cerebellum	SCAN
rs3742052	COQ5	cis	Muscle Skeletal	GTEx
rs3742052	KNTC1	cis	parietal	SCAN
rs3742052	COQ5	cis	Esophagus Muscularis	GTEx
rs3742052	COQ5	cis	lymphoblastoid	seeQTL
rs3742052	POP5	cis	lymphoblastoid	seeQTL
rs3742052	COQ5	Cis_1M	lymphoblastoid	RTeQTL
rs3742052	COQ5	cis	Adipose Subcutaneous	GTEx
rs3742052	COQ5	cis	lung	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120965800-120967600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:120966000-120967000	Active TSS	NHLF	lung
3	chr12:120966000-120967200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:120966000-120967200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:120966000-120967200	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr12:120966000-120967200	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr12:120966000-120967200	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr12:120966000-120967200	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr12:120966000-120967200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:120966000-120967200	Active TSS	Muscle Satellite Cultured Cells	--
11	chr12:120966000-120967200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:120966000-120967200	Active TSS	HSMM	muscle
13	chr12:120966000-120967200	Active TSS	K562	blood
14	chr12:120966000-120967200	Active TSS	NH-A	brain
15	chr12:120966000-120967400	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr12:120966000-120967400	Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr12:120966000-120967400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr12:120966000-120967400	Active TSS	Sigmoid Colon	Sigmoid Colon
19	chr12:120966000-120967400	Active TSS	Thymus	Thymus
20	chr12:120966000-120967400	Active TSS	Monocytes-CD14+_RO01746	blood
21	chr12:120966000-120967600	Active TSS	H1 Cell Line	embryonic stem cell
22	chr12:120966000-120967600	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr12:120966000-120967600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr12:120966000-120967600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr12:120966000-120967600	Active TSS	Brain Hippocampus Middle	brain
26	chr12:120966000-120967600	Active TSS	Fetal Lung	lung
27	chr12:120966000-120967600	Active TSS	A549	lung
28	chr12:120966000-120967800	Active TSS	H9 Cell Line	embryonic stem cell
29	chr12:120966000-120967800	Active TSS	Colon Smooth Muscle	Colon
30	chr12:120966000-120967800	Active TSS	Fetal Muscle Trunk	muscle
31	chr12:120966000-120968000	Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr12:120966000-120968000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr12:120966000-120968000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr12:120966000-120968000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr12:120966000-120968000	Active TSS	Brain Anterior Caudate	brain
36	chr12:120966000-120968000	Active TSS	Fetal Brain Female	brain
37	chr12:120966000-120968000	Active TSS	Fetal Stomach	stomach
38	chr12:120966000-120968000	Active TSS	GM12878-XiMat	blood
39	chr12:120966000-120968200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr12:120966000-120968200	Active TSS	Breast Myoepithelial Primary Cells	Breast
41	chr12:120966000-120968200	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr12:120966000-120968200	Active TSS	Fetal Kidney	kidney
43	chr12:120966000-120968200	Active TSS	Psoas Muscle	Psoas
44	chr12:120966000-120968200	Active TSS	Right Atrium	heart
45	chr12:120966000-120968200	Active TSS	NHDF-Ad	bronchial
46	chr12:120966000-120968400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr12:120966000-120968400	Active TSS	Rectal Smooth Muscle	rectum
48	chr12:120966000-120968400	Active TSS	HepG2	liver
49	chr12:120966000-120968600	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr12:120966200-120967000	Active TSS	HUVEC	blood vessel

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