Variant report

Variant	rs1077584
Chromosome Location	chr12:26331656-26331657
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11048420	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12300500	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12318480	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12818979	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12822290	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12827659	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1471506	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1480037	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1531649	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4963968	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7134610	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7316143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7979429	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26330600-26332400	Weak transcription	Stomach Mucosa	stomach
2	chr12:26330800-26337800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:26331200-26332400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr12:26331400-26331800	Weak transcription	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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