Variant report

Variant	rs1471506
Chromosome Location	chr12:26310234-26310235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:26308692..26310316-chr12:26311328..26313517,2	MCF-7	breast:
2	chr12:26301967..26303907-chr12:26310104..26311796,2	K562	blood:
3	chr12:26308693..26311647-chr12:26329505..26331946,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10161019	0.85[ASN][1000 genomes]
rs10734754	0.97[AFR][1000 genomes]
rs1077584	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11048415	0.82[ASN][1000 genomes]
rs11048419	0.97[ASN][1000 genomes]
rs11048420	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11829854	0.82[ASN][1000 genomes]
rs12300500	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1383112	0.84[GIH][hapmap]
rs1480032	0.97[AFR][1000 genomes]
rs1871553	0.91[ASN][1000 genomes]
rs1993972	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1993973	0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2046066	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2256828	0.82[ASN][1000 genomes]
rs2343074	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2343075	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3809140	0.84[GIH][hapmap]
rs4963968	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7134610	0.89[EUR][1000 genomes]
rs7304527	0.91[ASN][1000 genomes]
rs7309947	0.97[ASN][1000 genomes]
rs7316143	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74072014	0.91[ASN][1000 genomes]
rs74072064	0.91[ASN][1000 genomes]
rs7955074	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7979429	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26303200-26311600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:26305000-26311200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr12:26306000-26311400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:26306000-26311400	Weak transcription	Gastric	stomach
5	chr12:26306600-26311800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:26306800-26311600	Weak transcription	Spleen	Spleen
7	chr12:26307000-26311600	Weak transcription	Esophagus	oesophagus
8	chr12:26307800-26311000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:26308000-26316800	Weak transcription	HMEC	breast
10	chr12:26308400-26311400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:26309000-26311200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr12:26309200-26310600	Enhancers	Duodenum Mucosa	Duodenum
13	chr12:26309400-26310400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr12:26309600-26310400	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr12:26309600-26310800	Enhancers	Fetal Intestine Small	intestine
16	chr12:26309800-26310800	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr12:26309800-26311200	Weak transcription	Pancreas	Pancrea
18	chr12:26309800-26311200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr12:26309800-26311600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:26310000-26310400	Enhancers	Fetal Intestine Large	intestine
21	chr12:26310000-26312200	Enhancers	Primary B cells from cord blood	blood
22	chr12:26310200-26310600	Enhancers	Stomach Mucosa	stomach
23	chr12:26310200-26312400	Enhancers	GM12878-XiMat	blood
24	chr12:26310200-26316600	Enhancers	Primary B cells from peripheral blood	blood

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