Variant report

Variant	rs10734754
Chromosome Location	chr12:26303083-26303084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26301967..26303907-chr12:26310104..26311796,2	K562	blood:
2	chr12:26301690..26304457-chr12:26305717..26307853,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11048419	1.00[EUR][1000 genomes]
rs1471506	0.97[AFR][1000 genomes]
rs1480032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871553	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1993972	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1993973	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2046066	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2256828	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2343074	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2343075	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2729629	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56686254	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7304527	0.84[EUR][1000 genomes]
rs7309947	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7955074	1.00[CEU][hapmap];0.92[CHD][hapmap];0.88[MEX][hapmap]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26288600-26306600	Weak transcription	Aorta	Aorta
2	chr12:26301400-26306000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:26302200-26303400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:26302200-26304600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:26302600-26306600	Enhancers	NHDF-Ad	bronchial
6	chr12:26302800-26303200	Enhancers	Primary T cells from cord blood	blood
7	chr12:26302800-26303400	Enhancers	Primary B cells from peripheral blood	blood
8	chr12:26302800-26303400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr12:26302800-26303600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:26302800-26304000	Enhancers	Fetal Thymus	thymus
11	chr12:26302800-26307600	Enhancers	NHLF	lung
12	chr12:26302800-26308200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:26303000-26303200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:26303000-26303200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:26303000-26303200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr12:26303000-26303200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr12:26303000-26303200	Enhancers	Pancreas	Pancrea
18	chr12:26303000-26303200	Enhancers	Stomach Smooth Muscle	stomach
19	chr12:26303000-26303800	Enhancers	Fetal Muscle Leg	muscle
20	chr12:26303000-26304600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr12:26303000-26304600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr12:26303000-26304800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr12:26303000-26306600	Enhancers	HSMM	muscle
24	chr12:26303000-26307600	Enhancers	Osteobl	bone
25	chr12:26303000-26307800	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links