Variant report

Variant	rs2046066
Chromosome Location	chr12:26300795-26300796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26300005..26301505-chr6:1610035..1612225,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054598	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10161019	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10734754	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11048415	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11048419	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11829854	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11830209	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1471506	0.97[ASN][1000 genomes]
rs1480032	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1871553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1993972	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1993973	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2256828	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2343074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2343075	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2729629	0.81[AMR][1000 genomes]
rs35687239	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56686254	0.84[EUR][1000 genomes]
rs7304527	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7309947	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74072014	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74072064	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74072070	0.95[EUR][1000 genomes]
rs74072071	0.95[EUR][1000 genomes]
rs74072073	0.95[EUR][1000 genomes]
rs7955074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26288600-26306600	Weak transcription	Aorta	Aorta

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