Variant report

Variant	rs7979429
Chromosome Location	chr12:26338225-26338226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1077584	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11048420	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12300500	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12318480	1.00[CHB][hapmap]
rs12818979	1.00[CHB][hapmap]
rs12822290	1.00[CHB][hapmap]
rs12827659	1.00[CHB][hapmap]
rs1471506	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1480037	1.00[CHB][hapmap]
rs1531649	1.00[CHB][hapmap]
rs4963968	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7134610	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7316143	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26336200-26338600	Weak transcription	Psoas Muscle	Psoas
2	chr12:26337200-26338400	Weak transcription	Placenta	Placenta
3	chr12:26337400-26338600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:26337800-26341800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:26338000-26338400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:26338000-26341800	Enhancers	HMEC	breast
7	chr12:26338200-26338400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr12:26338200-26338800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:26338200-26338800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr12:26338200-26339000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:26338200-26341800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:26338200-26341800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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