Variant report

Variant	rs10782213
Chromosome Location	chr6:121812866-121812867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1005801	0.87[ASN][1000 genomes]
rs10747263	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924470	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4946572	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4946574	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6928725	0.93[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.95[LWK][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6937659	0.95[LWK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs9375034	0.86[AFR][1000 genomes]
rs9385197	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:121810000-121813000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:121811800-121813200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:121811800-121813200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:121811800-121813400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:121811800-121814000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:121812000-121813000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:121812400-121813200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:121812400-121813200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:121812400-121813200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:121812600-121813000	Enhancers	Hela-S3	cervix
12	chr6:121812600-121813200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:121812600-121813400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr6:121812600-121813400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:121812600-121813400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:121812800-121813200	Enhancers	Aorta	Aorta
17	chr6:121812800-121816200	Weak transcription	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links