Variant report

Variant	rs9375034
Chromosome Location	chr6:121801368-121801369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10747263	0.88[AFR][1000 genomes]
rs10782213	0.86[AFR][1000 genomes]
rs1815297	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1924470	0.87[AFR][1000 genomes]
rs4946572	0.89[AFR][1000 genomes]
rs4946574	0.89[AFR][1000 genomes]
rs6569206	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6928725	0.95[AFR][1000 genomes]
rs6937659	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9375032	0.90[EUR][1000 genomes]
rs9385197	0.88[AFR][1000 genomes]
rs9387957	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966657	chr6:121786080-121806494	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121800800-121801800	Active TSS	A549	lung
2	chr6:121800800-121802000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:121801000-121801600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:121801000-121803200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:121801000-121806200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:121801200-121803600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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