Variant report

Variant	rs1924470
Chromosome Location	chr6:121815062-121815063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1005801	0.82[ASN][1000 genomes]
rs10747263	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10782213	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4946572	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4946574	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6928725	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6937659	0.88[AFR][1000 genomes]
rs9375034	0.87[AFR][1000 genomes]
rs9385197	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:121812800-121816200	Weak transcription	A549	lung
3	chr6:121813000-121824200	Weak transcription	Hela-S3	cervix
4	chr6:121813200-121828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:121814000-121816800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:121815000-121817200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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