Variant report

Variant	rs4946574
Chromosome Location	chr6:121810019-121810020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1005801	0.83[ASN][1000 genomes]
rs10747263	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10782213	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1924470	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4946572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928725	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6937659	0.98[LWK][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs9375034	0.89[AFR][1000 genomes]
rs9385197	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5458	chr6:121787521-121823054	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121807000-121812600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:121807400-121812600	Weak transcription	Hela-S3	cervix
3	chr6:121807400-121824400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:121808400-121810400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr6:121808400-121810400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:121808600-121810400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:121809000-121810400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:121809400-121810600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:121809800-121810400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:121809800-121810600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:121809800-121810800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:121809800-121812400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:121810000-121810400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:121810000-121810400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:121810000-121810800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:121810000-121811800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr6:121810000-121811800	Weak transcription	A549	lung
18	chr6:121810000-121812600	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:121810000-121812600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:121810000-121813000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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