Variant report

Variant	rs10782682
Chromosome Location	chr1:79622435-79622436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10782680	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10874017	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10874018	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10874022	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10874023	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11162638	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11162642	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12134421	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1332816	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1352271	0.87[ASN][1000 genomes]
rs1487549	0.81[ASN][1000 genomes]
rs1487550	0.84[ASN][1000 genomes]
rs1487551	0.84[ASN][1000 genomes]
rs1487552	0.84[ASN][1000 genomes]
rs228458	0.88[AFR][1000 genomes]
rs228463	0.88[AFR][1000 genomes]
rs390842	0.96[AFR][1000 genomes]
rs4650388	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4650389	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4650390	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4650391	0.85[ASN][1000 genomes]
rs4650643	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5008836	0.81[ASN][1000 genomes]
rs6424638	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6679696	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7537014	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7554629	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs958745	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79621800-79626800	Weak transcription	Fetal Heart	heart

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