Variant report

Variant	rs1487552
Chromosome Location	chr1:79654094-79654095
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10782682	0.84[ASN][1000 genomes]
rs10874022	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10874023	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11162638	0.83[ASN][1000 genomes]
rs11162642	0.83[ASN][1000 genomes]
rs11162650	0.88[AFR][1000 genomes]
rs12134421	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1352271	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1487549	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1487550	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487551	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182761	0.84[AFR][1000 genomes]
rs228549	0.94[AFR][1000 genomes]
rs228550	0.94[AFR][1000 genomes]
rs228551	0.95[AFR][1000 genomes]
rs401462	0.88[AFR][1000 genomes]
rs4650390	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4650391	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5008836	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6424638	0.82[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6424639	0.84[LWK][hapmap];0.96[YRI][hapmap]
rs7525060	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs7537014	0.83[ASN][1000 genomes]
rs7554629	0.83[ASN][1000 genomes]
rs958745	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79652400-79655600	Enhancers	Hela-S3	cervix
2	chr1:79653400-79654200	Flanking Active TSS	HUVEC	blood vessel
3	chr1:79653400-79654400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:79653600-79654200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:79653600-79655600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:79653800-79654600	Enhancers	NH-A	brain
7	chr1:79654000-79654200	Enhancers	GM12878-XiMat	blood
8	chr1:79654000-79654400	Enhancers	HMEC	breast
9	chr1:79654000-79654600	Enhancers	Osteobl	bone
10	chr1:79654000-79654800	Enhancers	Muscle Satellite Cultured Cells	--

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