Variant report

Variant	rs1487549
Chromosome Location	chr1:79659136-79659137
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10782682	0.81[ASN][1000 genomes]
rs10874022	0.81[AFR][1000 genomes]
rs10874023	0.81[AFR][1000 genomes]
rs11162650	0.84[AFR][1000 genomes]
rs12134421	0.81[AFR][1000 genomes]
rs1352271	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1487550	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1487551	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1487552	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs182761	0.81[AFR][1000 genomes]
rs228549	0.94[AFR][1000 genomes]
rs228550	0.94[AFR][1000 genomes]
rs228551	0.93[AFR][1000 genomes]
rs401462	0.84[AFR][1000 genomes]
rs4650390	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4650391	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5008836	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6424638	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830326	chr1:79573379-79735667	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv871182	chr1:79614989-79822735	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv999471	chr1:79650363-79774433	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79658000-79659800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:79658200-79659200	Enhancers	Thymus	Thymus
3	chr1:79658600-79659400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:79658600-79659400	Enhancers	Fetal Thymus	thymus
5	chr1:79658800-79659200	Flanking Active TSS	Hela-S3	cervix
6	chr1:79658800-79659400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:79658800-79659400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:79658800-79659400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:79658800-79659400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:79658800-79659400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:79658800-79659400	Enhancers	Fetal Lung	lung
12	chr1:79658800-79659400	Flanking Active TSS	NH-A	brain
13	chr1:79658800-79659400	Enhancers	NHDF-Ad	bronchial
14	chr1:79658800-79659600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:79658800-79659600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:79658800-79659600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:79658800-79659600	Enhancers	Primary hematopoietic stem cells	blood
18	chr1:79658800-79659600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:79658800-79659600	Enhancers	GM12878-XiMat	blood
20	chr1:79658800-79659600	Flanking Active TSS	HUVEC	blood vessel
21	chr1:79659000-79659200	Active TSS	Right Atrium	heart
22	chr1:79659000-79659400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr1:79659000-79659400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:79659000-79659400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:79659000-79659400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:79659000-79659400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr1:79659000-79659400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr1:79659000-79659400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:79659000-79659400	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr1:79659000-79659400	Enhancers	Fetal Kidney	kidney
31	chr1:79659000-79659400	Enhancers	Fetal Stomach	stomach
32	chr1:79659000-79659400	Enhancers	Stomach Mucosa	stomach
33	chr1:79659000-79659400	Flanking Active TSS	HMEC	breast
34	chr1:79659000-79659400	Flanking Active TSS	Osteobl	bone
35	chr1:79659000-79659600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr1:79659000-79659600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:79659000-79659600	Enhancers	Primary T cells from cord blood	blood
38	chr1:79659000-79659600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr1:79659000-79659600	Enhancers	NHLF	lung
40	chr1:79659000-79659800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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