Variant report

Variant	rs10782911
Chromosome Location	chr1:103322641-103322642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:103322613..103325550-chr1:103327919..103330236,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1020918	0.84[ASN][1000 genomes]
rs1031821	0.86[ASN][1000 genomes]
rs10430072	0.89[ASN][1000 genomes]
rs10782909	0.88[ASN][1000 genomes]
rs10782910	0.89[ASN][1000 genomes]
rs10874660	0.87[ASN][1000 genomes]
rs10874661	0.87[ASN][1000 genomes]
rs12133652	0.85[ASN][1000 genomes]
rs12404334	0.89[ASN][1000 genomes]
rs1241171	0.98[ASN][1000 genomes]
rs1241179	0.86[ASN][1000 genomes]
rs1241186	0.85[ASN][1000 genomes]
rs1241187	0.98[ASN][1000 genomes]
rs1241194	0.86[ASN][1000 genomes]
rs1241196	0.98[ASN][1000 genomes]
rs1241198	0.85[ASN][1000 genomes]
rs1241199	0.85[ASN][1000 genomes]
rs1241200	0.85[ASN][1000 genomes]
rs1241201	0.98[ASN][1000 genomes]
rs1241202	0.98[ASN][1000 genomes]
rs1241205	0.82[ASN][1000 genomes]
rs1241206	0.93[ASN][1000 genomes]
rs1241207	0.80[ASN][1000 genomes]
rs1241208	0.80[ASN][1000 genomes]
rs1241209	0.93[ASN][1000 genomes]
rs1261690	0.86[ASN][1000 genomes]
rs1263061	0.83[ASN][1000 genomes]
rs1270748	0.98[ASN][1000 genomes]
rs1271798	0.80[ASN][1000 genomes]
rs12722976	0.81[JPT][hapmap]
rs12731405	0.85[ASN][1000 genomes]
rs1318755	0.83[ASN][1000 genomes]
rs1599703	0.88[ASN][1000 genomes]
rs1599706	0.88[ASN][1000 genomes]
rs1676507	0.84[ASN][1000 genomes]
rs1676508	0.84[ASN][1000 genomes]
rs1676510	0.85[ASN][1000 genomes]
rs1763342	0.82[ASN][1000 genomes]
rs1763343	0.83[ASN][1000 genomes]
rs1763348	0.97[ASN][1000 genomes]
rs1763349	0.84[ASN][1000 genomes]
rs1763359	0.85[ASN][1000 genomes]
rs1839632	0.87[ASN][1000 genomes]
rs2086014	0.89[ASN][1000 genomes]
rs2376259	0.89[ASN][1000 genomes]
rs2616002	0.86[ASN][1000 genomes]
rs2616003	0.86[ASN][1000 genomes]
rs2783566	0.84[ASN][1000 genomes]
rs4907983	0.82[ASN][1000 genomes]
rs4908270	0.85[ASN][1000 genomes]
rs61157885	0.97[ASN][1000 genomes]
rs644019	0.98[ASN][1000 genomes]
rs899019	0.86[ASN][1000 genomes]
rs899020	0.86[ASN][1000 genomes]
rs969272	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103318400-103324000	Weak transcription	Osteobl	bone
2	chr1:103318400-103324600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:103320600-103324000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:103322200-103323800	Weak transcription	NHDF-Ad	bronchial
5	chr1:103322600-103323800	Weak transcription	Fetal Intestine Large	intestine

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