Variant report

Variant	rs1241171
Chromosome Location	chr1:103299921-103299922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1020918	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1031821	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10430072	0.87[ASN][1000 genomes]
rs10782909	0.88[ASN][1000 genomes]
rs10782910	0.87[ASN][1000 genomes]
rs10782911	0.98[ASN][1000 genomes]
rs10874660	0.85[ASN][1000 genomes]
rs10874661	0.86[ASN][1000 genomes]
rs12133652	0.84[ASN][1000 genomes]
rs12404334	0.87[ASN][1000 genomes]
rs1241179	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1241186	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1241187	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1241194	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1241196	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1241198	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1241199	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1241200	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1241201	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1241202	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1241205	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1241206	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1241207	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1241208	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1241209	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1261690	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1263061	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1270748	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1271798	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12731405	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1318755	0.83[ASN][1000 genomes]
rs1599703	0.88[ASN][1000 genomes]
rs1599706	0.88[ASN][1000 genomes]
rs1676507	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1676508	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1676510	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1763342	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1763343	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1763348	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1763349	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1763359	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1839632	0.88[ASN][1000 genomes]
rs2086014	0.87[ASN][1000 genomes]
rs2169610	0.83[EUR][1000 genomes]
rs2376259	0.87[ASN][1000 genomes]
rs2616002	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2616003	0.87[ASN][1000 genomes]
rs2783566	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4907983	0.83[ASN][1000 genomes]
rs4908270	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61157885	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs644019	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs899019	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs899020	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs969272	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103299200-103300200	Enhancers	Placenta Amnion	Placenta Amnion
2	chr1:103299400-103301000	Weak transcription	Placenta	Placenta
3	chr1:103299400-103302800	Weak transcription	Hela-S3	cervix
4	chr1:103299600-103303600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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