Variant report

Variant	rs1839632
Chromosome Location	chr1:103299744-103299745
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10430072	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10735776	0.81[EUR][1000 genomes]
rs10747431	0.81[EUR][1000 genomes]
rs10782909	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10782910	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10782911	0.87[ASN][1000 genomes]
rs10874660	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10874661	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11164628	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11164629	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11164630	0.84[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11164632	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11164633	0.82[EUR][1000 genomes]
rs12023984	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12132471	0.80[EUR][1000 genomes]
rs12133652	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12136992	0.80[EUR][1000 genomes]
rs12144719	0.83[EUR][1000 genomes]
rs12404334	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12406439	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12410008	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1241171	0.88[ASN][1000 genomes]
rs1241187	0.88[ASN][1000 genomes]
rs1241196	0.88[ASN][1000 genomes]
rs1241201	0.88[ASN][1000 genomes]
rs1241202	0.88[ASN][1000 genomes]
rs1241206	0.82[ASN][1000 genomes]
rs1241209	0.82[ASN][1000 genomes]
rs1270748	0.88[ASN][1000 genomes]
rs12722976	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1318755	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1463048	0.88[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1599703	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1599706	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1763348	0.85[ASN][1000 genomes]
rs1841841	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1932331	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1932341	0.81[EUR][1000 genomes]
rs1932350	0.87[CEU][hapmap]
rs2077569	0.87[EUR][1000 genomes]
rs2086014	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2169608	0.88[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2169609	0.88[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2169610	0.81[ASN][1000 genomes]
rs2229783	0.91[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2376259	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2616003	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34689850	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3753841	0.87[CEU][hapmap]
rs4590689	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4908262	0.81[EUR][1000 genomes]
rs61157885	0.85[ASN][1000 genomes]
rs61812153	0.81[EUR][1000 genomes]
rs644019	0.88[ASN][1000 genomes]
rs7521799	0.81[EUR][1000 genomes]
rs921416	0.81[EUR][1000 genomes]
rs945326	0.88[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9787064	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103299000-103299800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:103299200-103300200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr1:103299400-103301000	Weak transcription	Placenta	Placenta
4	chr1:103299400-103302800	Weak transcription	Hela-S3	cervix
5	chr1:103299600-103303600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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