Variant report

Variant	rs2616003
Chromosome Location	chr1:103330777-103330778
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10430072	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10782909	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10782910	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10782911	0.86[ASN][1000 genomes]
rs10874660	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10874661	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11164630	0.91[CHB][hapmap]
rs12133652	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12404334	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1241171	0.87[ASN][1000 genomes]
rs1241187	0.87[ASN][1000 genomes]
rs1241196	0.87[ASN][1000 genomes]
rs1241201	0.87[ASN][1000 genomes]
rs1241202	0.87[ASN][1000 genomes]
rs1241206	0.85[ASN][1000 genomes]
rs1241209	0.85[ASN][1000 genomes]
rs1270748	0.87[ASN][1000 genomes]
rs12722976	0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs1318755	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1318756	0.80[ASN][1000 genomes]
rs1463048	0.86[CHB][hapmap]
rs1599703	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1599706	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1763348	0.89[ASN][1000 genomes]
rs1839632	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2086014	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2169608	0.91[CHB][hapmap]
rs2169609	0.91[CHB][hapmap]
rs2169610	0.81[ASN][1000 genomes]
rs2229783	0.91[CHB][hapmap]
rs2376259	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4590689	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4907985	0.81[ASN][1000 genomes]
rs61157885	0.89[ASN][1000 genomes]
rs644019	0.87[ASN][1000 genomes]
rs945326	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103324800-103334200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:103329000-103330800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:103330000-103331000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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