Variant report

Variant	rs2169610
Chromosome Location	chr1:103326613-103326614
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1020918	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1031821	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10430072	0.83[ASN][1000 genomes]
rs10782909	0.81[ASN][1000 genomes]
rs10782910	0.83[ASN][1000 genomes]
rs10874660	0.81[ASN][1000 genomes]
rs10874661	0.81[ASN][1000 genomes]
rs10874662	0.82[ASN][1000 genomes]
rs11164628	0.83[ASN][1000 genomes]
rs11164629	0.83[ASN][1000 genomes]
rs11164630	0.83[ASN][1000 genomes]
rs11164632	0.83[ASN][1000 genomes]
rs12023984	0.83[ASN][1000 genomes]
rs12404334	0.83[ASN][1000 genomes]
rs1241171	0.83[EUR][1000 genomes]
rs1241179	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1241186	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1241187	0.83[EUR][1000 genomes]
rs1241194	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1241196	0.83[EUR][1000 genomes]
rs1241198	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1241199	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1241200	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1241201	0.83[EUR][1000 genomes]
rs1241202	0.83[EUR][1000 genomes]
rs1241205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1241206	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1241207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1241208	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1241209	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1261690	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1263061	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1270748	0.83[EUR][1000 genomes]
rs1271798	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12722976	0.86[ASN][1000 genomes]
rs12731405	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1318756	0.85[ASN][1000 genomes]
rs1463048	0.83[ASN][1000 genomes]
rs1599703	0.81[ASN][1000 genomes]
rs1599706	0.81[ASN][1000 genomes]
rs1676507	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1676508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1676510	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1763342	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1763343	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1763348	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1763349	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1763359	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1839632	0.81[ASN][1000 genomes]
rs1841841	0.83[ASN][1000 genomes]
rs1932331	0.83[ASN][1000 genomes]
rs2077569	0.83[ASN][1000 genomes]
rs2086014	0.83[ASN][1000 genomes]
rs2169608	0.82[ASN][1000 genomes]
rs2169609	0.83[ASN][1000 genomes]
rs2229783	0.83[ASN][1000 genomes]
rs2376259	0.83[ASN][1000 genomes]
rs2616002	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2616003	0.81[ASN][1000 genomes]
rs2783566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4907983	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4907985	0.86[ASN][1000 genomes]
rs4908270	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61157885	0.84[EUR][1000 genomes]
rs644019	0.83[EUR][1000 genomes]
rs899019	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs899020	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs945326	0.83[ASN][1000 genomes]
rs969272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103324800-103334200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:103325000-103327800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:103326600-103326800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:103326600-103327400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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