Variant report

Variant	rs10782977
Chromosome Location	chr1:94585736-94585737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94532251..94537168-chr1:94582958..94586481,4	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10782978	1.00[AFR][1000 genomes]
rs1687930	1.00[AFR][1000 genomes]
rs1687931	1.00[AFR][1000 genomes]
rs1687948	1.00[AFR][1000 genomes]
rs17111192	1.00[AFR][1000 genomes]
rs1765641	1.00[AFR][1000 genomes]
rs2932955	1.00[AFR][1000 genomes]
rs4847197	1.00[AFR][1000 genomes]
rs6419495	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807674	chr1:94549175-94588191	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv870932	chr1:94579053-94607607	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv871679	chr1:94579426-94598568	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv871502	chr1:94579426-94607607	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv871306	chr1:94579426-94609478	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv871210	chr1:94579426-94629643	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv523430	chr1:94582249-94591481	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94564600-94591800	Weak transcription	Right Atrium	heart
2	chr1:94580200-94587600	Enhancers	Placenta	Placenta
3	chr1:94580400-94587600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:94581400-94587600	Enhancers	Fetal Muscle Leg	muscle
5	chr1:94581400-94588000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr1:94581600-94586200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:94581600-94588600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:94582200-94587400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr1:94583000-94591400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:94583200-94586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:94583600-94587600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:94583600-94587600	Enhancers	Fetal Kidney	kidney
13	chr1:94584000-94587600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr1:94584200-94587000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr1:94584400-94587400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:94584800-94586200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:94584800-94586200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr1:94584800-94586200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:94584800-94587600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:94585000-94586200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr1:94585000-94586200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr1:94585000-94586400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:94585000-94587000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr1:94585000-94587400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:94585200-94586000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr1:94585200-94586200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr1:94585200-94586400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr1:94585400-94586000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:94585400-94586000	Enhancers	Brain Anterior Caudate	brain
30	chr1:94585400-94586000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr1:94585600-94586000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:94585600-94586000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:94585600-94586000	Enhancers	Brain Substantia Nigra	brain
34	chr1:94585600-94586000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr1:94585600-94586600	Weak transcription	Fetal Muscle Trunk	muscle
36	chr1:94585600-94587600	Flanking Active TSS	HepG2	liver
37	chr1:94585600-94591400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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