Variant report

Variant	rs1687930
Chromosome Location	chr1:94760764-94760765
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10782977	1.00[AFR][1000 genomes]
rs10782978	1.00[AFR][1000 genomes]
rs1687931	1.00[AFR][1000 genomes]
rs1687948	1.00[AFR][1000 genomes]
rs17111192	1.00[AFR][1000 genomes]
rs1765641	1.00[AFR][1000 genomes]
rs2932955	1.00[AFR][1000 genomes]
rs4847197	1.00[AFR][1000 genomes]
rs6419495	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94752600-94765200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:94759000-94761600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:94759200-94762600	Weak transcription	Spleen	Spleen
4	chr1:94759400-94764400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:94759600-94762200	Weak transcription	HepG2	liver
6	chr1:94760200-94762200	Weak transcription	Lung	lung
7	chr1:94760600-94762000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:94760600-94765600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:94760600-94770000	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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