Variant report

Variant	rs6419495
Chromosome Location	chr1:94740050-94740051
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10782977	1.00[AFR][1000 genomes]
rs10782978	1.00[AFR][1000 genomes]
rs1687930	1.00[AFR][1000 genomes]
rs1687931	1.00[AFR][1000 genomes]
rs1687948	1.00[AFR][1000 genomes]
rs17111192	1.00[AFR][1000 genomes]
rs1765641	1.00[AFR][1000 genomes]
rs2932955	1.00[AFR][1000 genomes]
rs4847197	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94725800-94742600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:94730800-94743600	Weak transcription	Lung	lung
3	chr1:94731600-94740200	Weak transcription	Adipose Nuclei	Adipose
4	chr1:94734200-94748600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:94736400-94742400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:94736800-94740600	Enhancers	Osteobl	bone
7	chr1:94736800-94742400	Weak transcription	HSMMtube	muscle
8	chr1:94736800-94744800	Weak transcription	HUVEC	blood vessel
9	chr1:94737200-94742000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:94737600-94740200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:94738400-94742800	Weak transcription	NHLF	lung
12	chr1:94738400-94744600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:94738400-94750000	Weak transcription	Pancreas	Pancrea
14	chr1:94738400-94750000	Weak transcription	HMEC	breast
15	chr1:94738600-94744400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:94738600-94750200	Weak transcription	Fetal Kidney	kidney
17	chr1:94738800-94742400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:94738800-94750600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:94739000-94744800	Weak transcription	HSMM	muscle
20	chr1:94739200-94740600	Weak transcription	NHDF-Ad	bronchial
21	chr1:94739200-94746200	Weak transcription	NH-A	brain
22	chr1:94739400-94742000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:94739600-94740600	Enhancers	Ovary	ovary
24	chr1:94739600-94742400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr1:94740000-94741200	Enhancers	Stomach Smooth Muscle	stomach
26	chr1:94740000-94741200	Enhancers	HepG2	liver

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