Variant report

Variant	rs10784269
Chromosome Location	chr12:62256708-62256709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10877746	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs10877750	0.82[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap]
rs10877753	0.86[CHB][hapmap]
rs11174177	0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap]
rs12368938	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs1869890	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2198776	0.85[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap]
rs7137381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7302585	0.96[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap]
rs7304109	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes]
rs7308204	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs7961921	0.81[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs7979443	0.82[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62252200-62257400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr12:62252200-62263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:62254600-62258800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:62255000-62257400	Weak transcription	Adipose Nuclei	Adipose
5	chr12:62255000-62258600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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