Variant report

Variant	rs7304109
Chromosome Location	chr12:62198475-62198476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10784260	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10784269	0.91[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes]
rs10877732	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10877741	0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs10877746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10877750	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10877753	0.95[CHB][hapmap]
rs11174177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12368938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1869890	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap]
rs2198776	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs6581425	0.81[LWK][hapmap]
rs6581429	0.82[LWK][hapmap]
rs7137381	0.91[CHB][hapmap];0.86[CHD][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7302585	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7308204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7961921	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7979443	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7980047	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62196800-62198600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr12:62197000-62198600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr12:62197800-62198600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr12:62197800-62198600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:62198000-62198600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr12:62198200-62198600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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