Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10784260	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10784269	0.81[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs10877732	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10877741	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs10877746	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap]
rs10877747	0.83[JPT][hapmap]
rs10877749	0.81[CEU][hapmap]
rs10877750	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs10877753	0.95[CHB][hapmap]
rs11174177	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.87[YRI][hapmap]
rs11174191	0.83[JPT][hapmap]
rs11174202	0.83[JPT][hapmap]
rs12368938	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs1869890	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs2198776	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7137381	0.80[CEU][hapmap];0.91[CHB][hapmap]
rs7302585	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap]
rs7304109	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7308204	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs7979443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7980047	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv826402	chr12:62116803-62178453	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv826403	chr12:62130037-62190482	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62140400-62147200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62140800-62149200	Weak transcription	Ovary	ovary
3	chr12:62142600-62144400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search: