Variant report

Variant	rs1869890
Chromosome Location	chr12:62213401-62213402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10784260	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10784269	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10877732	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10877741	0.81[CEU][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs10877746	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap]
rs10877749	0.81[CEU][hapmap]
rs10877750	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap]
rs10877753	0.86[CHB][hapmap]
rs11174177	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs12368938	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap]
rs2198776	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[YRI][hapmap]
rs7137381	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7302585	0.85[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7304109	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7308204	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap]
rs7961921	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7979443	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs7980047	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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