Variant report

Variant	rs10786017
Chromosome Location	chr10:93527382-93527383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93525967..93528056-chr10:93556170..93559024,2	MCF-7	breast:
2	chr10:93525891..93528491-chr10:93557186..93559232,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228701	Chromatin interaction
ENSG00000107854	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10786009	0.92[EUR][1000 genomes]
rs10786010	0.92[EUR][1000 genomes]
rs1080496	0.92[EUR][1000 genomes]
rs10881947	0.92[EUR][1000 genomes]
rs10881957	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186666	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1361552	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418161	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1592051	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1986941	0.92[EUR][1000 genomes]
rs2096079	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2421694	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4244930	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4933220	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7077236	0.81[ASN][1000 genomes]
rs7092745	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7092884	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7093728	0.87[EUR][1000 genomes]
rs7094498	0.92[EUR][1000 genomes]
rs7098763	0.92[EUR][1000 genomes]
rs7099557	0.92[EUR][1000 genomes]
rs7475294	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs10786017	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs10786017	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs10786017	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs10786017	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs10786017	TNKS2-AS1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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