Variant report

Variant	rs1592051
Chromosome Location	chr10:93542186-93542187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93536771..93542984-chr10:93556419..93559593,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228701	Chromatin interaction
ENSG00000107854	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10786009	0.90[EUR][1000 genomes]
rs10786010	0.90[EUR][1000 genomes]
rs10786017	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080496	0.91[EUR][1000 genomes]
rs10881934	1.00[JPT][hapmap]
rs10881947	0.91[EUR][1000 genomes]
rs10881957	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186666	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1361552	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418161	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1986941	0.91[EUR][1000 genomes]
rs2096079	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2421694	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4244930	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4933220	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7077236	0.81[ASN][1000 genomes]
rs7092745	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7092884	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7093728	0.85[EUR][1000 genomes]
rs7094498	0.90[EUR][1000 genomes]
rs7098763	0.91[EUR][1000 genomes]
rs7099557	0.91[EUR][1000 genomes]
rs7475294	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7913504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs1592051	MYOF	cis	cerebellum	SCAN
rs1592051	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs1592051	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs1592051	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs1592051	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs1592051	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93538800-93542200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:93539000-93542600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:93539200-93542200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:93539200-93542200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr10:93539200-93542200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:93539400-93542600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr10:93539800-93547000	Weak transcription	Esophagus	oesophagus
8	chr10:93541000-93555800	Weak transcription	Primary B cells from cord blood	blood
9	chr10:93541600-93542800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:93541800-93543000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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