Variant report

Variant	rs2096079
Chromosome Location	chr10:93496667-93496668
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10786009	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10786010	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10786017	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1080496	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881947	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881957	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186666	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361552	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1418161	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592051	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1986941	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2421694	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4244930	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933220	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7077236	0.88[ASN][1000 genomes]
rs7092745	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092884	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093728	0.89[EUR][1000 genomes]
rs7094498	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7098763	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7099557	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7475294	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2096079	TNKS2-AS1	cis	Esophagus Muscularis	GTEx
rs2096079	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs2096079	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs2096079	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs2096079	TNKS2-AS1	cis	Heart Left Ventricle	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93496400-93497000	Enhancers	H9 Cell Line	embryonic stem cell
2	chr10:93496400-93497000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr10:93496600-93496800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:93496600-93497200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr10:93496600-93497600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links