Variant report

Variant	rs7475294
Chromosome Location	chr10:93508199-93508200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93507039..93510554-chr10:93666843..93669404,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000272817	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10786009	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10786010	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10786017	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1080496	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881947	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186666	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361552	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1418161	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592051	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1986941	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2096079	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421694	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4244930	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933220	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7077236	0.88[ASN][1000 genomes]
rs7092745	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092884	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093728	0.89[EUR][1000 genomes]
rs7094498	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7098763	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7099557	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7913504	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975785	chr10:93501141-93525212	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7475294	TNKS2-AS1	cis	Skin Sun Exposed Lower leg	GTEx
rs7475294	TNKS2-AS1	cis	Esophagus Mucosa	GTEx
rs7475294	TNKS2-AS1	cis	Adipose Subcutaneous	GTEx
rs7475294	TNKS2-AS1	cis	Heart Left Ventricle	GTEx
rs7475294	TNKS2-AS1	cis	Esophagus Muscularis	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93505400-93509400	Weak transcription	Placenta	Placenta
2	chr10:93505600-93509000	Weak transcription	HepG2	liver
3	chr10:93505800-93509000	Weak transcription	A549	lung
4	chr10:93507800-93509000	Enhancers	Hela-S3	cervix

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