Variant report

Variant	rs10792454
Chromosome Location	chr11:64754587-64754588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64754069..64755968-chr11:64760951..64763260,2	MCF-7	breast:
2	chr11:64646103..64648605-chr11:64754086..64755797,2	MCF-7	breast:
3	chr11:64693891..64698050-chr11:64753803..64757942,3	K562	blood:
4	chr11:64750017..64751752-chr11:64754322..64756444,2	K562	blood:

Variant related genes	Relation type
ENSG00000068971	Chromatin interaction
ENSG00000110047	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11231912	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1152642	0.91[ASN][1000 genomes]
rs1196617	0.99[ASN][1000 genomes]
rs1196618	0.99[ASN][1000 genomes]
rs1196903	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12226283	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs183578	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs183579	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs240568	0.88[ASN][1000 genomes]
rs240569	0.92[ASN][1000 genomes]
rs240570	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2670909	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs471772	0.95[ASN][1000 genomes]
rs495330	0.91[ASN][1000 genomes]
rs528941	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs532508	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs551292	0.97[ASN][1000 genomes]
rs57751380	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs582378	0.95[ASN][1000 genomes]
rs582580	0.96[ASN][1000 genomes]
rs586616	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs587835	0.90[ASN][1000 genomes]
rs589351	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs596321	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs600868	0.95[ASN][1000 genomes]
rs602404	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs610208	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs615709	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs616124	0.91[ASN][1000 genomes]
rs616341	0.92[ASN][1000 genomes]
rs61893590	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs650506	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs654772	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs659122	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs660165	0.95[ASN][1000 genomes]
rs664226	0.95[ASN][1000 genomes]
rs670524	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs674981	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs688368	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694907	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases
3	esv32668	chr11:64743070-64758087	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64748000-64756400	Weak transcription	Lung	lung
2	chr11:64750200-64756600	Weak transcription	Colonic Mucosa	Colon
3	chr11:64750200-64757000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:64752000-64756400	Weak transcription	Right Atrium	heart
5	chr11:64752400-64756200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:64752400-64764200	Weak transcription	Aorta	Aorta
7	chr11:64752600-64755000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:64752600-64755000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:64752600-64755000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr11:64752600-64755200	Weak transcription	Primary B cells from cord blood	blood
11	chr11:64752600-64755400	Weak transcription	GM12878-XiMat	blood
12	chr11:64752600-64756800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:64752800-64755600	Weak transcription	Placenta	Placenta
14	chr11:64753200-64755200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr11:64753800-64755400	Enhancers	HepG2	liver
16	chr11:64754000-64754600	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr11:64754000-64757200	Weak transcription	K562	blood
18	chr11:64754200-64754600	Enhancers	Fetal Intestine Large	intestine
19	chr11:64754200-64756400	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links