Variant report

Variant	rs240568
Chromosome Location	chr11:64729034-64729035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64728080..64729823-chr11:64778498..64780871,2	MCF-7	breast:
2	chr11:64727356..64729952-chr11:64739370..64742304,2	K562	blood:
3	chr11:64689666..64692617-chr11:64726636..64729077,2	K562	blood:

Variant related genes	Relation type
ENSG00000068971	Chromatin interaction
ENSG00000168070	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10792454	0.88[ASN][1000 genomes]
rs11231912	0.94[ASN][1000 genomes]
rs1152642	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1196617	0.89[ASN][1000 genomes]
rs1196618	0.89[ASN][1000 genomes]
rs1196903	0.89[ASN][1000 genomes]
rs12226283	0.83[ASN][1000 genomes]
rs183578	0.95[ASN][1000 genomes]
rs183579	0.95[ASN][1000 genomes]
rs240569	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs240570	0.94[ASN][1000 genomes]
rs2670909	0.95[ASN][1000 genomes]
rs471772	0.85[ASN][1000 genomes]
rs495330	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs528941	0.95[ASN][1000 genomes]
rs532508	0.95[ASN][1000 genomes]
rs551292	0.88[ASN][1000 genomes]
rs57751380	0.84[ASN][1000 genomes]
rs582378	0.85[ASN][1000 genomes]
rs582580	0.87[ASN][1000 genomes]
rs586616	0.93[ASN][1000 genomes]
rs587835	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs589351	0.95[ASN][1000 genomes]
rs591966	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs596321	0.93[ASN][1000 genomes]
rs600868	0.85[ASN][1000 genomes]
rs602404	0.95[ASN][1000 genomes]
rs610208	0.90[ASN][1000 genomes]
rs615709	0.91[ASN][1000 genomes]
rs616124	0.84[ASN][1000 genomes]
rs616341	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61893590	0.93[ASN][1000 genomes]
rs650506	0.84[ASN][1000 genomes]
rs654772	0.93[ASN][1000 genomes]
rs659122	0.95[ASN][1000 genomes]
rs660165	0.85[ASN][1000 genomes]
rs664226	0.85[ASN][1000 genomes]
rs670524	0.93[ASN][1000 genomes]
rs674981	0.89[ASN][1000 genomes]
rs688368	0.88[ASN][1000 genomes]
rs694907	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases
3	nsv976460	chr11:64727780-64743097	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64728600-64736400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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