Variant report

Variant	rs587835
Chromosome Location	chr11:64706442-64706443
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64683299..64686210-chr11:64705910..64707683,2	K562	blood:
2	chr11:64703443..64707909-chr11:64708011..64711926,5	K562	blood:
3	chr11:64696369..64699688-chr11:64704058..64706503,4	K562	blood:
4	chr11:64692005..64693674-chr11:64705167..64706866,2	K562	blood:
5	chr11:64700459..64702214-chr11:64704518..64706728,2	K562	blood:

Variant related genes	Relation type
ENSG00000110046	Chromatin interaction
ENSG00000168070	Chromatin interaction
ENSG00000068971	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10792454	0.90[ASN][1000 genomes]
rs11231912	0.96[ASN][1000 genomes]
rs1152642	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1196617	0.91[ASN][1000 genomes]
rs1196618	0.91[ASN][1000 genomes]
rs1196903	0.91[ASN][1000 genomes]
rs12226283	0.85[ASN][1000 genomes]
rs183578	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs183579	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs240568	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs240569	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs240570	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2670909	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs471772	0.87[ASN][1000 genomes]
rs495330	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs528941	0.97[ASN][1000 genomes]
rs532508	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs551292	0.90[ASN][1000 genomes]
rs57751380	0.87[ASN][1000 genomes]
rs582378	0.87[ASN][1000 genomes]
rs582580	0.89[ASN][1000 genomes]
rs586616	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs589351	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs591966	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs596321	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs600868	0.87[ASN][1000 genomes]
rs602404	0.97[ASN][1000 genomes]
rs610208	0.92[ASN][1000 genomes]
rs615709	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs616124	0.86[ASN][1000 genomes]
rs616341	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61893590	0.95[ASN][1000 genomes]
rs650506	0.91[ASN][1000 genomes]
rs654772	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs659122	0.97[ASN][1000 genomes]
rs660165	0.87[ASN][1000 genomes]
rs664226	0.87[ASN][1000 genomes]
rs670524	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs674981	0.91[ASN][1000 genomes]
rs688368	0.90[ASN][1000 genomes]
rs694907	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897706	chr11:64591679-64721908	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1028 gene(s)	inside rSNPs	diseases
2	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
3	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64703000-64706600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:64703200-64708400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:64703600-64709200	Weak transcription	Ovary	ovary
4	chr11:64703800-64706800	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links