Variant report

Variant	rs659122
Chromosome Location	chr11:64738420-64738421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64716620..64718841-chr11:64735458..64738436,2	K562	blood:
2	chr11:64690400..64694324-chr11:64737120..64740822,5	K562	blood:
3	chr11:64690400..64693254-chr11:64737120..64738862,2	K562	blood:

Variant related genes	Relation type
ENSG00000068971	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10792454	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11231912	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1152642	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1196617	0.94[ASN][1000 genomes]
rs1196618	0.94[ASN][1000 genomes]
rs1196903	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12226283	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs183578	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs183579	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs240568	0.95[ASN][1000 genomes]
rs240569	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs240570	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2670909	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471772	0.90[ASN][1000 genomes]
rs484182	0.81[CHB][hapmap]
rs495330	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs528941	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs532508	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs534236	0.81[CHB][hapmap]
rs551292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs57751380	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs582378	0.90[ASN][1000 genomes]
rs582580	0.90[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs586616	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs587835	0.97[ASN][1000 genomes]
rs589351	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596321	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs600868	0.90[ASN][1000 genomes]
rs602404	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs610208	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs615709	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs616124	0.89[ASN][1000 genomes]
rs616341	1.00[ASN][1000 genomes]
rs61893590	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs650506	0.91[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs654772	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6591869	0.81[CHB][hapmap]
rs660165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs663767	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs664226	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs670524	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs674981	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs688368	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs694907	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases
3	nsv976460	chr11:64727780-64743097	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64735200-64739000	Weak transcription	GM12878-XiMat	blood
2	chr11:64736000-64739000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:64736200-64739000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:64736400-64739200	Enhancers	HMEC	breast
5	chr11:64737200-64738800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:64737200-64739000	Weak transcription	Fetal Brain Male	brain
7	chr11:64737400-64739000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:64737400-64739000	Weak transcription	Colonic Mucosa	Colon
9	chr11:64737400-64739000	Weak transcription	NH-A	brain
10	chr11:64737400-64739200	Weak transcription	Placenta	Placenta
11	chr11:64737800-64739000	Weak transcription	Esophagus	oesophagus
12	chr11:64738000-64739000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:64738000-64739200	Enhancers	HUVEC	blood vessel
14	chr11:64738200-64738600	Bivalent Enhancer	Fetal Thymus	thymus
15	chr11:64738200-64738600	Flanking Active TSS	Hela-S3	cervix
16	chr11:64738200-64739000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr11:64738200-64739000	Enhancers	Primary B cells from peripheral blood	blood
18	chr11:64738200-64739000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr11:64738200-64739000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr11:64738200-64739000	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr11:64738200-64739000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:64738200-64739000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:64738200-64739000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr11:64738200-64739200	Enhancers	Primary B cells from cord blood	blood
25	chr11:64738200-64739200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:64738200-64739200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:64738400-64738600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:64738400-64738600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
29	chr11:64738400-64738600	Enhancers	Stomach Mucosa	stomach
30	chr11:64738400-64738600	Bivalent Enhancer	Thymus	Thymus
31	chr11:64738400-64739000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr11:64738400-64739000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr11:64738400-64739000	Enhancers	Adipose Nuclei	Adipose
34	chr11:64738400-64739000	Enhancers	Lung	lung
35	chr11:64738400-64739000	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr11:64738400-64739200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:64738400-64739200	Enhancers	Duodenum Mucosa	Duodenum
38	chr11:64738400-64739200	Enhancers	Gastric	stomach

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