Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175018453..175021258-chr1:175048643..175051325,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10912888	0.91[GIH][hapmap]
rs11577778	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11582121	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11583313	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583729	0.91[GIH][hapmap]
rs12059398	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12065394	0.89[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12068402	0.95[EUR][1000 genomes]
rs12068982	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12076122	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16847779	0.87[GIH][hapmap]
rs17302688	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17302950	1.00[ASN][1000 genomes]
rs17374668	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17374873	1.00[ASN][1000 genomes]
rs2269647	0.89[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes]
rs4466606	0.91[GIH][hapmap]
rs4625241	0.91[GIH][hapmap]
rs55808408	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55967803	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56226643	0.92[EUR][1000 genomes]
rs59822966	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61541139	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7515773	0.91[GIH][hapmap]
rs7546260	0.91[GIH][hapmap]
rs9650986	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011472	chr1:175013165-175042885	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10798330	KLHL20	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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