Variant report

Variant	rs10798417
Chromosome Location	chr1:175801732-175801733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175795763..175798800-chr1:175799017..175801805,3	K562	blood:
2	chr1:175800754..175802278-chr1:175802767..175804456,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1325913	0.87[EUR][1000 genomes]
rs1325914	0.87[EUR][1000 genomes]
rs1359587	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1359589	0.85[ASN][1000 genomes]
rs1409143	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1522638	0.98[EUR][1000 genomes]
rs1610270	0.98[EUR][1000 genomes]
rs1819266	0.85[EUR][1000 genomes]
rs1916052	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1925946	0.91[EUR][1000 genomes]
rs2182310	0.87[EUR][1000 genomes]
rs2182311	0.87[EUR][1000 genomes]
rs34769313	0.87[EUR][1000 genomes]
rs4421556	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4462099	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4650929	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4652118	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4652119	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4652130	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs487948	0.90[CEU][hapmap];0.85[TSI][hapmap]
rs547353	0.97[EUR][1000 genomes]
rs58209612	0.84[EUR][1000 genomes]
rs59978036	0.87[EUR][1000 genomes]
rs61148850	0.86[EUR][1000 genomes]
rs6425361	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6676267	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6677856	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6699546	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7515842	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7516044	0.98[EUR][1000 genomes]
rs7528236	0.87[EUR][1000 genomes]
rs7531762	0.98[EUR][1000 genomes]
rs7546985	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs942955	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs942956	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs942957	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs959850	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175799800-175804400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr1:175799800-175804800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:175800000-175802000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr1:175800200-175802200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:175800200-175802200	Weak transcription	Fetal Intestine Large	intestine
6	chr1:175800200-175804600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:175800400-175802200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:175800800-175801800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:175800800-175802800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:175801200-175801800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr1:175801200-175802400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:175801200-175803200	Weak transcription	Hela-S3	cervix
13	chr1:175801600-175803200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:175801600-175803800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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