Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10798417	0.91[EUR][1000 genomes]
rs1359587	0.81[EUR][1000 genomes]
rs1409143	0.81[EUR][1000 genomes]
rs1522638	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1610270	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1916052	0.91[EUR][1000 genomes]
rs4650929	0.81[EUR][1000 genomes]
rs4652130	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs547353	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6425361	0.81[EUR][1000 genomes]
rs6676267	0.81[EUR][1000 genomes]
rs6699546	0.82[EUR][1000 genomes]
rs7515842	0.81[EUR][1000 genomes]
rs7516044	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7528236	0.82[EUR][1000 genomes]
rs7531762	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7546985	0.81[EUR][1000 genomes]
rs942955	0.81[EUR][1000 genomes]
rs942956	0.81[EUR][1000 genomes]
rs942957	0.81[EUR][1000 genomes]
rs959850	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175786600-175791200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:175786600-175791400	Weak transcription	Aorta	Aorta
3	chr1:175786600-175792800	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:175789400-175792800	Enhancers	Hela-S3	cervix
5	chr1:175789600-175789800	Enhancers	Placenta	Placenta

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