Variant report

Variant	rs1522638
Chromosome Location	chr1:175788387-175788388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10798417	0.98[EUR][1000 genomes]
rs1325913	0.85[EUR][1000 genomes]
rs1325914	0.85[EUR][1000 genomes]
rs1359587	0.88[EUR][1000 genomes]
rs1409143	0.87[EUR][1000 genomes]
rs1610270	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1819266	0.83[EUR][1000 genomes]
rs1916052	0.98[EUR][1000 genomes]
rs1925946	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2182310	0.85[EUR][1000 genomes]
rs2182311	0.85[EUR][1000 genomes]
rs34769313	0.85[EUR][1000 genomes]
rs4421556	0.84[EUR][1000 genomes]
rs4462099	0.84[EUR][1000 genomes]
rs4650929	0.87[EUR][1000 genomes]
rs4652118	0.82[EUR][1000 genomes]
rs4652119	0.85[EUR][1000 genomes]
rs4652130	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs479282	0.81[EUR][1000 genomes]
rs479987	0.81[EUR][1000 genomes]
rs487948	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs547353	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558360	0.81[EUR][1000 genomes]
rs558413	0.81[EUR][1000 genomes]
rs561334	0.81[EUR][1000 genomes]
rs58209612	0.83[EUR][1000 genomes]
rs59978036	0.85[EUR][1000 genomes]
rs61148850	0.85[EUR][1000 genomes]
rs641991	0.81[EUR][1000 genomes]
rs6425361	0.87[EUR][1000 genomes]
rs656837	0.81[EUR][1000 genomes]
rs6667722	0.83[AMR][1000 genomes]
rs6676267	0.87[EUR][1000 genomes]
rs6677856	0.85[EUR][1000 genomes]
rs669355	0.81[EUR][1000 genomes]
rs6699546	0.89[EUR][1000 genomes]
rs671000	0.81[EUR][1000 genomes]
rs7515842	0.87[EUR][1000 genomes]
rs7516044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528236	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7531762	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7546985	0.87[EUR][1000 genomes]
rs942955	0.88[EUR][1000 genomes]
rs942956	0.88[EUR][1000 genomes]
rs942957	0.88[EUR][1000 genomes]
rs959850	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175786600-175789400	Weak transcription	Hela-S3	cervix
2	chr1:175786600-175791200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:175786600-175791400	Weak transcription	Aorta	Aorta
4	chr1:175786600-175792800	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:175787800-175788400	Weak transcription	Fetal Brain Male	brain
6	chr1:175788000-175788600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:175788000-175788800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:175788200-175788600	Enhancers	HSMMtube	muscle

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