Variant report

Variant	rs1916052
Chromosome Location	chr1:175789371-175789372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10798417	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1325913	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1325914	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1359587	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1359589	0.90[ASN][1000 genomes]
rs1409143	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1522638	0.98[EUR][1000 genomes]
rs1610270	0.98[EUR][1000 genomes]
rs1819266	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1925946	0.91[EUR][1000 genomes]
rs2182310	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2182311	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34769313	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4421556	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4462099	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4650929	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4652118	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4652119	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4652130	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs487948	0.90[CEU][hapmap];0.85[TSI][hapmap]
rs547353	0.97[EUR][1000 genomes]
rs58209612	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59978036	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61148850	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6425361	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6676267	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6677856	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6699546	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7515842	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7516044	0.98[EUR][1000 genomes]
rs7528236	0.87[EUR][1000 genomes]
rs7531762	0.98[EUR][1000 genomes]
rs7546985	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs942955	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs942956	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs942957	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs959850	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175786600-175789400	Weak transcription	Hela-S3	cervix
2	chr1:175786600-175791200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:175786600-175791400	Weak transcription	Aorta	Aorta
4	chr1:175786600-175792800	Weak transcription	Fetal Muscle Leg	muscle

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