Variant report

Variant	rs10800097
Chromosome Location	chr1:165383793-165383794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs157865	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs157866	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs157867	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs157869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs157870	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs157871	1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs157872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs283691	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6669441	0.83[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165362800-165392200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:165373600-165392600	Weak transcription	Brain Substantia Nigra	brain
3	chr1:165376400-165393400	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:165377800-165389000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:165378000-165399600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:165378400-165391200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:165378600-165383800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:165379200-165385800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:165379400-165393800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:165379600-165384200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:165379600-165389000	Weak transcription	Psoas Muscle	Psoas
12	chr1:165380200-165385200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr1:165380400-165394000	Weak transcription	Right Ventricle	heart
14	chr1:165380600-165384400	Weak transcription	Fetal Lung	lung
15	chr1:165381000-165385800	Weak transcription	Left Ventricle	heart
16	chr1:165381200-165389200	Strong transcription	Fetal Muscle Leg	muscle
17	chr1:165382600-165389200	Weak transcription	Adipose Nuclei	Adipose
18	chr1:165382800-165389000	Strong transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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