Variant report

Variant	rs157865
Chromosome Location	chr1:165385767-165385768
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10800097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs157866	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157867	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs157872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs157874	0.89[EUR][1000 genomes]
rs283691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669441	0.82[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165362800-165392200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:165373600-165392600	Weak transcription	Brain Substantia Nigra	brain
3	chr1:165376400-165393400	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:165377800-165389000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:165378000-165399600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:165378400-165391200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr1:165379200-165385800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:165379400-165393800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:165379600-165389000	Weak transcription	Psoas Muscle	Psoas
10	chr1:165380400-165394000	Weak transcription	Right Ventricle	heart
11	chr1:165381000-165385800	Weak transcription	Left Ventricle	heart
12	chr1:165381200-165389200	Strong transcription	Fetal Muscle Leg	muscle
13	chr1:165382600-165389200	Weak transcription	Adipose Nuclei	Adipose
14	chr1:165382800-165389000	Strong transcription	Fetal Muscle Trunk	muscle
15	chr1:165383800-165386400	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:165384200-165386400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:165384400-165386600	Strong transcription	Fetal Lung	lung
18	chr1:165385200-165386600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:165385400-165386600	Bivalent Enhancer	Fetal Heart	heart
20	chr1:165385600-165393600	Weak transcription	Brain Inferior Temporal Lobe	brain

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