Variant report

Variant	rs157870
Chromosome Location	chr1:165389285-165389286
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10800097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs157865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs157866	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157867	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs157872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs157874	0.89[EUR][1000 genomes]
rs283691	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669441	0.83[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165362800-165392200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:165373600-165392600	Weak transcription	Brain Substantia Nigra	brain
3	chr1:165376400-165393400	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:165378000-165399600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:165378400-165391200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:165379400-165393800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:165380400-165394000	Weak transcription	Right Ventricle	heart
8	chr1:165385600-165393600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:165386600-165392000	Weak transcription	Fetal Lung	lung
10	chr1:165388200-165389800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:165388600-165390000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:165388600-165390400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr1:165388800-165389400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:165389000-165390000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:165389000-165390000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:165389000-165390200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:165389000-165390600	Enhancers	NHEK	skin
18	chr1:165389000-165391800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr1:165389200-165389600	Weak transcription	Psoas Muscle	Psoas
20	chr1:165389200-165389800	Enhancers	Adipose Nuclei	Adipose
21	chr1:165389200-165389800	Enhancers	Aorta	Aorta
22	chr1:165389200-165391200	Weak transcription	Fetal Muscle Leg	muscle
23	chr1:165389200-165393600	Weak transcription	Right Atrium	heart
24	chr1:165389200-165393800	Weak transcription	Left Ventricle	heart

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