Variant report

Variant	rs157871
Chromosome Location	chr1:165391382-165391383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10800097	1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs113471	0.82[EUR][1000 genomes]
rs157865	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs157866	0.95[ASN][1000 genomes]
rs157867	0.95[ASN][1000 genomes]
rs157869	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs157870	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs157872	1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs157875	0.84[EUR][1000 genomes]
rs157876	0.82[EUR][1000 genomes]
rs157880	1.00[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs157881	0.82[EUR][1000 genomes]
rs157883	0.82[EUR][1000 genomes]
rs166899	1.00[CEU][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs283691	0.95[ASN][1000 genomes]
rs463638	0.82[EUR][1000 genomes]
rs517456	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6669441	0.81[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs157871	DUSP23	cis	parietal	SCAN
rs157871	KCNJ10	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165362800-165392200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:165373600-165392600	Weak transcription	Brain Substantia Nigra	brain
3	chr1:165376400-165393400	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:165378000-165399600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:165379400-165393800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:165380400-165394000	Weak transcription	Right Ventricle	heart
7	chr1:165385600-165393600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr1:165386600-165392000	Weak transcription	Fetal Lung	lung
9	chr1:165389000-165391800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:165389200-165393600	Weak transcription	Right Atrium	heart
11	chr1:165389200-165393800	Weak transcription	Left Ventricle	heart
12	chr1:165389400-165392600	Weak transcription	Esophagus	oesophagus
13	chr1:165389400-165394000	Weak transcription	Fetal Intestine Small	intestine
14	chr1:165389800-165392000	Weak transcription	Adipose Nuclei	Adipose
15	chr1:165390000-165393200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:165390200-165393600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:165390400-165391400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:165390800-165393200	Enhancers	Psoas Muscle	Psoas
19	chr1:165391000-165391600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:165391200-165391600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr1:165391200-165392000	Strong transcription	Fetal Muscle Leg	muscle
22	chr1:165391200-165392200	Weak transcription	Ovary	ovary
23	chr1:165391200-165393800	Enhancers	Skeletal Muscle Male	skeletal muscle

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