Variant report

Variant	rs517456
Chromosome Location	chr1:165395667-165395668
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs113471	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467664	0.95[JPT][hapmap]
rs157871	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs157875	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs157876	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157881	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs157883	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs166897	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs166899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1831002	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3767348	0.84[ASN][1000 genomes]
rs463638	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669441	0.81[CEU][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165378000-165399600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:165394000-165400600	Weak transcription	Fetal Brain Male	brain
3	chr1:165394200-165396600	Enhancers	Psoas Muscle	Psoas
4	chr1:165394400-165396400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:165394400-165402800	Weak transcription	Brain Anterior Caudate	brain
6	chr1:165394400-165405800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:165394800-165396600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr1:165394800-165396600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr1:165394800-165397200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:165395000-165397000	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:165395000-165397200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:165395000-165397800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr1:165395200-165397000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:165395200-165408600	Weak transcription	Lung	lung
15	chr1:165395400-165396400	Weak transcription	Left Ventricle	heart
16	chr1:165395400-165397000	Weak transcription	Fetal Lung	lung
17	chr1:165395400-165398600	Strong transcription	Fetal Muscle Leg	muscle
18	chr1:165395600-165395800	Enhancers	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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