Variant report

Variant	rs157883
Chromosome Location	chr1:165402486-165402487
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs113471	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157871	0.82[EUR][1000 genomes]
rs157875	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs157876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157880	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs166897	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs166899	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1831002	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3767348	0.84[ASN][1000 genomes]
rs463638	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517456	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165394400-165402800	Weak transcription	Brain Anterior Caudate	brain
2	chr1:165394400-165405800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:165395200-165408600	Weak transcription	Lung	lung
4	chr1:165397600-165403600	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:165397800-165408600	Weak transcription	Fetal Lung	lung
6	chr1:165398200-165405400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:165398200-165412200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr1:165398400-165408600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:165398600-165408400	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:165400600-165403000	Weak transcription	Brain Substantia Nigra	brain
11	chr1:165402200-165403400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr1:165402400-165402800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:165402400-165403800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:165402400-165406600	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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