Variant report

Variant	rs113471
Chromosome Location	chr1:165398115-165398116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs157871	0.82[EUR][1000 genomes]
rs157875	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs157876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157880	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs157881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs157883	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs166897	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs166899	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1831002	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3767348	0.84[ASN][1000 genomes]
rs463638	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517456	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165378000-165399600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:165394000-165400600	Weak transcription	Fetal Brain Male	brain
3	chr1:165394400-165402800	Weak transcription	Brain Anterior Caudate	brain
4	chr1:165394400-165405800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:165395200-165408600	Weak transcription	Lung	lung
6	chr1:165395400-165398600	Strong transcription	Fetal Muscle Leg	muscle
7	chr1:165395800-165400600	Weak transcription	Small Intestine	intestine
8	chr1:165396000-165400200	Weak transcription	Fetal Kidney	kidney
9	chr1:165396600-165398800	Weak transcription	Psoas Muscle	Psoas
10	chr1:165396600-165399200	Weak transcription	Left Ventricle	heart
11	chr1:165397000-165398200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:165397600-165398200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:165397600-165403600	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:165397800-165398400	Genic enhancers	Fetal Muscle Trunk	muscle
15	chr1:165397800-165399000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:165397800-165408600	Weak transcription	Fetal Lung	lung
17	chr1:165398000-165398600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:165398000-165399200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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